Posts tagged neuroimaging
An example workflow for voxel-wise encoding models using a BIDS app
- 31 July 2020
This shows how to (for a BIDS compliant dataset) extract features, save them in BIDS format, and run a BIDS app for voxel-wise encoding models. We are going to use this dataset.
Non-consecutive header level increase; H1 to H4 [myst.header]
Adding contours of a surface region to a statistical map in Nilearn
- 23 January 2020
I often use Nilearn’s surface plotting to show a statistical map on the cortex - and wish that I could add the outlines of a region on top of the statistical map. This is harder than it seems at the first thought, since matplotlib’s mesh plotting allows us to only edit the whole color of a mesh-face, hence we need to find all faces that correspond to the outside edge of a region.
But here’s code that’s working for me.
